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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV28288.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | Trihelix | ||||||||
Protein Properties | Length: 284aa MW: 33527 Da PI: 8.582 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 82.1 | 7.7e-26 | 29 | 111 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ qe+++L+ +r e++ ++ ++k++k lWe +s +m+e+g++rs+ qCk+kw+nl +ryk ++++e ++ ++++p++++l+ KZV28288.1 29 QWSIQETRDLLMIRAELDPTFMETKRNKLLWEVISTRMKEKGYTRSADQCKCKWKNLVTRYKGCEAMEAEG---MRQQFPFYNDLQ 111 7********************************************************************97...56679****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 1.59E-23 | 28 | 93 | No hit | No description |
Pfam | PF13837 | 2.4E-20 | 29 | 112 | No hit | No description |
PROSITE profile | PS50090 | 7.364 | 30 | 86 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0016592 | Cellular Component | mediator complex |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MDQGHHSQLH NPYSAALNID TGSGDRFPQW SIQETRDLLM IRAELDPTFM ETKRNKLLWE 60 VISTRMKEKG YTRSADQCKC KWKNLVTRYK GCEAMEAEGM RQQFPFYNDL QTIFATRMQR 120 MLWLEAEGGG ATASTPKKRK KTVQYSSSDE EDENEESEVE KGGGTRRKKI VNKGKETGNP 180 PAGTSSSNVC SIINGVKGIM EDYMKQQMEM EMQWIKTYEA REEERRAKEV EWRQKMEVLE 240 NERMMMERRW RERDEQRRIR EEARAERRDA LITALLNKLR REDM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ebi_A | 3e-13 | 30 | 107 | 7 | 84 | DNA binding protein GT-1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 136 | 140 | KKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011095020.1 | 1e-130 | PREDICTED: trihelix transcription factor GT-3b | ||||
Swissprot | O80450 | 2e-70 | TGT3B_ARATH; Trihelix transcription factor GT-3b | ||||
TrEMBL | A0A022RPD3 | 1e-118 | A0A022RPD3_ERYGU; Uncharacterized protein | ||||
STRING | POPTR_0006s10240.1 | 1e-102 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4187 | 23 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38250.1 | 3e-55 | Trihelix family protein |