PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV23785.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family bHLH
Protein Properties Length: 293aa    MW: 32976.6 Da    PI: 6.9547
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV23785.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12.1e-10130172855
                 HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y k+Lq
  KZV23785.1 130 AERKRREKLSQRFIDLSALVPGL-----KKMDKASVLGDAIKYTKQLQ 172
                 7**********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.27E-10113176No hitNo description
PROSITE profilePS5088814.583122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-15128194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-13128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-14129182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-8130172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00144222292No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDDPSFFHQW PVVSIVDLKS VSYGSPFAHE DPHNPFSLQP VPDHERALES TQHESSKPLK  60
LITSSTPSGA FHFIDEGISR PKMEAWTLDF PSESVVSESS TFGEKNYVVR ACERAKRVSS  120
NIGTKDSVLA ERKRREKLSQ RFIDLSALVP GLKKMDKASV LGDAIKYTKQ LQERVKILEH  180
QTKIKSIESV VFVKKHLHCS DSIVLSETLP EIEARFSDND VLINVQCERR NGLLERTVAE  240
IERHHLTVVN SSAMSFGHSA LYIVVMAKKD EDCGMNTKEV VQNLCTSLET LLK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130135ERKRRE
2131136RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV23785.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088147.15e-92transcription factor bHLH18-like
SwissprotQ9T0721e-47BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2Z7APL40.0A0A2Z7APL4_9LAMI; Uncharacterized protein
STRINGPOPTR_0009s08500.15e-79(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-50bHLH family protein