PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV20626.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family RAV
Protein Properties Length: 366aa    MW: 40738.8 Da    PI: 9.601
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV20626.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.29.5e-1467115155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s++kGV   + +grW A+I++      ++r++lg+f  +eeAa+a++ a+++++g
  KZV20626.1  67 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDTAAQRFRG 115
                 689***9788.8*********3.....5*************************98 PP

2B3100.21.2e-31195297199
                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 f+k+ tpsdv+k++rlv+pk++ae+h    +g++ ++  l +ed  g++W+++++y+++s++yvltkGW++Fvk+++L+ gD+v F+++   +++l++ 
  KZV20626.1 195 FEKAVTPSDVGKLNRLVIPKQHAERHfplqSGNTSKGLLLNFEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRPGDIVSFQRSTGPDKQLYID 293
                 89****************************88899999*************************************************887788889998 PP

                 EE-S CS
          B3  96 vfrk 99 
                 + ++
  KZV20626.1 294 WSSR 297
                 8775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.8E-967115IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-1767123IPR016177DNA-binding domain
CDDcd000189.04E-2567122No hitNo description
Gene3DG3DSA:3.30.730.109.9E-2168123IPR001471AP2/ERF domain
PROSITE profilePS5103220.12668123IPR001471AP2/ERF domain
SMARTSM003802.0E-3068129IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.5E-40189299IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-29194295IPR015300DNA-binding pseudobarrel domain
CDDcd100171.01E-28194283No hitNo description
PfamPF023623.1E-28195297IPR003340B3 DNA binding domain
PROSITE profilePS5086314.297195298IPR003340B3 DNA binding domain
SMARTSM010195.3E-24195298IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDGSSLDDQS ITSESTSTTP PLAPPSSASP ETLTKSVVAL CRVGSGASVV IDPENGVEAE  60
SRKLPSSRFK GVVPQPNGRW GAQIYEKHQR VWLGTFNEEE EAARAYDTAA QRFRGRDAIT  120
NFKPLSESEA DEVETAFLNS HSKAEIVDML RKHTYDDELE QGRKIYAGGK RSVANGNFIF  180
TCGGVMVAKT RDQLFEKAVT PSDVGKLNRL VIPKQHAERH FPLQSGNTSK GLLLNFEDMG  240
GKVWRFRYSY WNSSQSYVLT KGWSRFVKEK NLRPGDIVSF QRSTGPDKQL YIDWSSRRNT  300
LNSNVVEASG RDQPVQTIRL FGVNIFEPPT KSTNAAAAAA IDCRRNREMK LVGLECRKKQ  360
KIIDAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A9e-5819229711117DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV20626.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070834.10.0AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9C6M51e-145RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A2Z7AG360.0A0A2Z7AG36_9LAMI; Uncharacterized protein
STRINGMigut.E00306.1.p1e-180(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29582453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-143RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]