PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV18374.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB_related
Protein Properties Length: 92aa    MW: 10561.7 Da    PI: 9.082
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV18374.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.21.2e-101457344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT+   +++ da +++ ++   +W+ Iar +g g++++++k ++
       KZV18374.1 14 TWTPRQNKQFEDALARYDKDtpdRWHNIARAVG-GKSAEEVKRHY 57
                     7********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.6781065IPR017884SANT domain
SMARTSM007179.7E-101163IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-71365IPR009057Homeodomain-like
SuperFamilySSF466891.12E-121368IPR009057Homeodomain-like
CDDcd001672.19E-81461No hitNo description
PfamPF002497.1E-81458IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MATSSFTASS RCSTWTPRQN KQFEDALARY DKDTPDRWHN IARAVGGKSA EEVKRHYEAL  60
VKDIMHIETD QVPIPNYKPI SSNPRGYGNE HR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-27883279RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV18374.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083673.11e-48protein RADIALIS-like 3
SwissprotQ1A1732e-33RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2Z7AGI68e-64A0A2Z7AGI6_9LAMI; Protein RADIALIS-like 3
STRINGXP_009771192.13e-40(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.14e-36RAD-like 6