PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca9155.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 309aa    MW: 32883 Da    PI: 10.0084
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca9155.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-073458226
               -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
               k ++C  f+ t  C++Gd+C+F+H 
  Dca9155.1 34 KSKPCTKFFSTSGCPFGDSCHFSHH 58
               7789********************6 PP

2zf-CCCH25.81.8e-0894119227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                kt++C++f+    Ck+Gd+C++aHg+
  Dca9155.1  94 KTRICKRFSSAEGCKFGDKCHYAHGE 119
                8***********************96 PP

3zf-CCCH25.42.5e-08276301127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +kt++C +f + GtC +Gd+C+ aHg+
  Dca9155.1 276 FKTKICENFTK-GTCTFGDKCHLAHGE 301
                69*********.**********99995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.5263260IPR000571Zinc finger, CCCH-type
SMARTSM003560.0113259IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-63360IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-73458IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-53458IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-891123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-1391124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23992120IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-492119IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-694119IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.29E-13156231IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.2E-14156230IPR004088K Homology domain, type 1
SMARTSM003221.0E-10159229IPR004087K Homology domain
PROSITE profilePS5008413.858160224IPR004088K Homology domain, type 1
PfamPF000137.9E-10162225IPR004088K Homology domain, type 1
CDDcd001051.14E-10162224No hitNo description
Gene3DG3DSA:4.10.1000.104.0E-13272306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-7275305IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-7275301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.685275302IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-6276301IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDGRKRRQDG GASNVNGGFK KHKQETDSSG IGSKSKPCTK FFSTSGCPFG DSCHFSHHVP  60
RGYNVMAQMM NLPTIAKVGP PPLQAQNGTA PTVKTRICKR FSSAEGCKFG DKCHYAHGEW  120
ELNKPVMISF EDHAMQGRYG LRNDPPGSRG LAGGFGESDN ATVKIGVDSA LVGAIIGKSG  180
VNSKQISHHT GVKLSIRDHE SNPNLKNIEL QGSFDQIKIA TTMVRDLVAN VSASAFTKGM  240
GHGQVQGRGQ GHGQVQGRGQ GHGGSAPAYG PQSNSFKTKI CENFTKGTCT FGDKCHLAHG  300
ETELRKSGV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672666.11e-137PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R08e-91C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A0K9RDP71e-126A0A0K9RDP7_SPIOL; Uncharacterized protein
STRINGXP_010672666.11e-136(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.17e-69C3H family protein