PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca8957.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C2H2
Protein Properties Length: 318aa    MW: 35482.9 Da    PI: 7.0201
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca8957.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014157176120
                EEETTTTEEESSHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                ++Cp C ++F+r  n++ H+
  Dca8957.1 157 FSCPLCFRTFNRYNNMQMHM 176
                89*****************9 PP

2zf-C2H214.30.00012241263123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C +Cgk F  + + ++H +++
  Dca8957.1 241 FACRKCGKAFAVRGDWRTHEKNC 263
                78*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551.1157179IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-4157176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.473157184IPR007087Zinc finger, C2H2
PROSITE patternPS000280159179IPR007087Zinc finger, C2H2
SuperFamilySSF576671.84E-6223261No hitNo description
Gene3DG3DSA:3.30.160.606.6E-6228261IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035554241261IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.871241261IPR007087Zinc finger, C2H2
SMARTSM00355180267290IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEVDKTFIIS SSSHHTSSHH HHDDDHHDDD PEGVGVALHL GLPSYTQVDL ISSLSSSSTT  60
SNNPNHHHHH DDDDHHHHHH DHHKYNNNDD SILVGGGDNN ERSIEEVTIA SSYSSSIGGG  120
GGGGGYCNTA GIAAGSVNKG QYWIPTPAQI LIGPTQFSCP LCFRTFNRYN NMQMHMWGHG  180
SQYRKGPESL RGTQPTAMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP  240
FACRKCGKAF AVRGDWRTHE KNCGKLWYCT CGSDFKHKRS LKDHIKSFGH SHSAYGIDCF  300
DEDDDPASEI EQDNDSVQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021728953.11e-138zinc finger protein WIP2-like
SwissprotQ9SVY11e-131ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A314Z4091e-135A0A314Z409_PRUYE; Zinc finger protein WIP2-like
TrEMBLA0A438CDH61e-135A0A438CDH6_VITVI; Zinc finger protein WIP2
STRINGXP_010673606.11e-137(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-126C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]