PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca60701.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 482aa    MW: 54545.4 Da    PI: 9.1441
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca60701.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.2e-08454477226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 +++lCr++ + G C+yG++CkF Hg
  Dca60701.1 454 RQKLCRYYPQ-GRCHYGNQCKFLHG 477
                 678*******.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.720.301.6E-886132IPR003034SAP domain
SuperFamilySSF689061.67E-787132No hitNo description
PROSITE profilePS508009.84697131IPR003034SAP domain
SMARTSM005132.2E-497131IPR003034SAP domain
PfamPF020377.8E-1098131IPR003034SAP domain
PROSITE profilePS5010315.619453479IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-5454477IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6454477IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-7456478IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MAKSQINYIN PEEDDNELDD STDEEFDSDD SEVDPSFTDE LLSAQSNLSK LSINNQSNSR  60
NGEESQEDDE GLISQKLSKE DALIFENVQK IIDCGKVEKL KVDQCKVYLR KHGLRLTGKK  120
DILIQRIKEH IEILNGGGEA KYPPSSFVLN CKGDACLGDV VMFEQTVYEG YSIVSRSAAG  180
PPCGKRTVAG RIVNESYGAA KQQHTFTVEV LWSKGQNPLP PLHPLLIKGR NLYKLDTRRQ  240
KWENEAERQR VLSEKHTRGT VARSNREVRI QEKMARKSLK GVRVVSKNKA NPCHQNDSKH  300
ATDQQQVPSK GVRVVSKNKA NPCHQNESKL ATDQQQVLSK VPTDRRVIPS SALSRYPLTQ  360
PDKPDLAAPH LPIDHRVIPS SFLSRYPLTQ IDEPALPAPH FLQQQRFDYR PPQNTYSTHG  420
YQRQPVNSAL SCSFTERNPP RTAMTGPRQL VVQRQKLCRY YPQGRCHYGN QCKFLHGSNV  480
NR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021865531.11e-139zinc finger CCCH domain-containing protein 62-like
TrEMBLA0A0K9QHJ21e-137A0A0K9QHJ2_SPIOL; Uncharacterized protein
STRINGXP_010685268.11e-136(Beta vulgaris)