PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca59719.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family TCP
Protein Properties Length: 264aa    MW: 27529.6 Da    PI: 10.0122
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca59719.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.23.6e-3927132289
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg.......... 88 
                 a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++  ++++ ss ++  +++          
  Dca59719.1  27 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStsSPHTLSSHHH--HHHglaaaaaadp 123
                 789*****************************************************************9888543344333333..2223455555555 PP

         TCP  89 ........k 89 
                         k
  Dca59719.1 124 kptpfllgK 132
                 555555542 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.8923387IPR017887Transcription factor TCP subgroup
PfamPF036345.2E-3333132IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MSATDATPSA ATTTNTTTTT NTNTTLAVKK PPAKDRHSKV DGRGRRIRMP IICAARVFQL  60
TRELGHKSDG QTIEWLLRQA EPSIIAATGT GTTPASFSTS SPHTLSSHHH HHHGLAAAAA  120
ADPKPTPFLL GKRLRTSAEE EQEQQNGVVL HKEDGGVTTA TVGPAAAGYW AIPARPDFWS  180
FAPSEMVLGH HHSGLGSGAG MGARLFSGSL GIQHHPGLGD GSGSASRVGN YLPIAQGHHL  240
NLLASLSGAS PPSGSGPRRE DDPR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021750556.15e-95transcription factor TCP7-like
SwissprotQ9FMX28e-71TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A0K9R6R12e-89A0A0K9R6R1_SPIOL; Uncharacterized protein
STRINGXP_010688658.11e-77(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.11e-43TCP family protein