PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca57659.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C2H2
Protein Properties Length: 996aa    MW: 110507 Da    PI: 4.5913
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca57659.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79e-053355223
                EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                kC++C+++F+ k++L +H+ + H
  Dca57659.1 33 KCHKCSTPFNEKDELLKHLIScH 55
                8******************9955 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.3693260IPR007087Zinc finger, C2H2
SMARTSM003550.543255IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803455IPR007087Zinc finger, C2H2
SMARTSM003550.0767799IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 996 aa     Download sequence    Send to blast
MHLNISPNLE NRVTPSKDVQ LGEVHELSTS ALKCHKCSTP FNEKDELLKH LISCHKRKRR  60
KAGVYIENDD LLKDGKYECQ FCDKVYLDRG SYFGHVGIHV KNYLKSAGGS SSVKAKQNTF  120
KPVSIGEVSL SVSETLGSTE LIAESGAGTQ NMLGNGELNN DCIEKKITAP DAERLSENEK  180
NDHSSYTRPM ELNAAQTDKT LDCESSGKQE AADHIANKNT REVDCTNKNT TEVDCPGSDK  240
VVLDYSDNYQ EIISSEFVSP EAIERPPVVA ENSEAYLSSD SKLSDFGADS SFVTENVLET  300
EERLTSEFDL AAGNEGKSSN QSFAKCYLVN NPVERYCYDE EVNVMHHQGL IEVSGSGHID  360
VDMVDEDDIK GLESMEESSA VPFTAEESCG VIMNKTENIE SKVSTLSDDQ QTKTLMVNKR  420
HEFADLVNET EVDLSSFENT ELTDDYERII QERHCESNVQ FYSKDNVSNY SSNEAVRGSN  480
VKMVQPSGVR DFQQFKHSCS TENNTGEVLN KQGEEHTGNL FFLSRSRDSH LDTTDITNTD  540
QSHNHVPDVL WSFDSYVDDK QAQVSKSLFY ALSMNEHSRE VAMNDVGNVS TSTTTMHLPE  600
LEKVDSSRSS NLLLDFNNIT EMNGNFLSSA QHGAVPEETS PFQLWGQQSN GLVDSQTKVY  660
GGGSTFLQQA RASQNNSLNL VGHQRQSTEG YNLNEVCMNE QRYGQRNKLG VFSRNNEART  720
EGISHGNALN LAGYQQQCDL GYNLNKPCIS QQSYGVQHTE SGSYNHLNQA RQDRVAYGNS  780
LSLASVQQCD SRYSLNKTRD QQPVDTGYSL NKGYVDSRDR DLMIGFGNSG GRRNQTGTTD  840
FLWGSNDGSI LPGGLVDSSS SQAQSSGSFQ PFDFLSDKSG NDLYNANGKF DNMSSFEGLR  900
SSVEPMEFSF MTPQESNPQL EHPKVLQYNT EINQSFGSWD QKTTTLPNMM PNHVVSVMCV  960
WCGNEFHQDS LSCEMQAGSI GSLCPSCKAR MSGQFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15560KRKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021740226.10.0uncharacterized protein LOC110706595
TrEMBLA0A0K9RTD10.0A0A0K9RTD1_SPIOL; Uncharacterized protein