PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca55379.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C2H2
Protein Properties Length: 1407aa    MW: 155984 Da    PI: 4.6206
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca55379.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013448470223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 kC++C+++F+ k++L +H+ + H
  Dca55379.1 448 KCHKCSTPFNEKDELLKHLIScH 470
                 8******************9955 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.369447475IPR007087Zinc finger, C2H2
SMARTSM003550.54447470IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280449470IPR007087Zinc finger, C2H2
SMARTSM003550.076492514IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280494514IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1407 aa     Download sequence    Send to blast
MASATVGPSP PPPPSDHLTV ESIPTVDLRR LTQSELAALA LCSSRAVDLR RCDDVVIPKI  60
DRSVFNESAG SRKQTYSRLR LAPRNNPNLI DSAAAAAAKP RRVTPEPPVL DAEHAENLRI  120
VSLFKSLFNL SNGVDVSSND DVENHDGCGG GGGDELALVP VSVTYCDTVP GDKKRKRGRK  180
PKSETSLEMT VFEEKKAEDE AAEVEVMEEE EEEEDEETAE EVAAVTVEEV QRRWEESEKE  240
LVNKNGVVVN LAELAKAEDP YTVELKRLTE GKETAEELLG FVNDLEGEWG SRRKKRKIVD  300
ANLIGDFLPN GWKILIAIKK KQGRAWVFCR RYVRLFLPSF RLSSPNGRYF VSCKEVSSYL  360
ISLTGSQEPK EQPAVEDPDI TAVDVASKNA VETETKVEHQ AIPDSSLFND REDRHMHLNI  420
SPNLENRVTP SKDVQLGEVH ELSTSALKCH KCSTPFNEKD ELLKHLISCH KRKRRKAGVY  480
IENDDLLKDG KYECQFCDKV YLDRGSYFGH VGIHVKNYLK SAGGSSSVKA KQNTFKPVSI  540
GEVSLSVSET LGSTELIAES GAGTQNMLGN GELNNDCIEK KMTAPDAERL SENEKNDHSS  600
YTRPMELNAA QTDKTLDCES SGKQEAADHI ANKNTTEVDC TNKNTTEVDC PGSDKVVLDY  660
SDNYQEIISS EFVSPEAIER PPVVAENSEA YLSSDSKLSD FGADSSFVTE NVLETEERLT  720
SEFDLAAGNE GKSSNQSFAK CYLVNNPVER YCYDEEVNVM HHQGLTEVSG SGHIDVDMVD  780
EDDIKGLESM EESSAVPFTA EESCGVIMNK TENIESKVST LSDDQQTKTL MVNKRHDFAD  840
LVNETEVDLS SFENTELTDD YERIIQERHC ESNVQFYSKD NVSNYSSNEA VRGSNVKMVQ  900
PSGVRDFQQF KHSCSTENNT GEVLNKQGEE HTGNLFFLSR SRDSHLDTTD ITNTDQSHNH  960
VPDVLRYVDD KQAQVSKSLF YALSMNEHSR EVAMNDVGNV STSTTTMHLP ELEKVDSSRS  1020
SNLLLDFNNI TEMNGNFLSS AQHGAVPEET SPFQLWGQQS NGLVDSQTKV YGGGSTFLQQ  1080
ARASQNNSLN LVGHQRQSTE GYNLNEVCMN EQRYGQRNKL GVFSRNNEAR TEGISHGNAL  1140
NLAGYQQQCD LGYNLNKPCI SQQSYGVQHT ESGSYNHLNQ ARQDRVAYGN SLSLASVQQC  1200
DSRYSLNKTR DQQPVDTGYS LNKGYVDSRD RDLMIGFGNS GGRRNQTGTT DFLWGSNDGS  1260
ILPGGLVDSS SSQAQSSGSF QPFDFLSDKS GNDLYNANGK FDNMSSFEGL RSSVEPMEFS  1320
FMTPQESNPQ LEHPKVLQYN TEINQSFGSW DQKTTTLPNM MPNHVVSVMC VWCGNEFHQD  1380
SLSCEMQAGS IGSLCPSCKA RMSGQFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171180DKKRKRGRKP
2470475KRKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021740226.10.0uncharacterized protein LOC110706595
TrEMBLA0A0K9RTD10.0A0A0K9RTD1_SPIOL; Uncharacterized protein
STRINGXP_010676391.10.0(Beta vulgaris)