PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca55.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family LBD
Protein Properties Length: 237aa    MW: 24869.2 Da    PI: 7.8623
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca55.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.91.1e-40271271100
   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
              +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll+++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael++ +++
  Dca55.1  27 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLQNIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYFQAH 127
              7***********************9989*******************************************************************998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.24426128IPR004883Lateral organ boundaries, LOB
PfamPF031955.2E-4027125IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MSCANPSSSG GGGSGSGGSG GGGGGGPCGA CKFLRRKCVA GCIFAPYFDS EQGAAHFAAV  60
HKVFGASNVS KLLQNIPVHK RLDAVVTICY EAQARLRDPV YGCVAHIFAL QQQVVNLQAE  120
LSYFQAHLAT LEVPTPPPPP PQPLMIPPHL SISDLPSAST VPATYDLSSL FDPMTQPSWP  180
MQQQHQQRGP MDLRHFGPII DNVGPIHGNN SSSSAQRGDL HVIGHIHGPS TSSSMSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-38231287111LOB family transfactor Ramosa2.1
5ly0_B4e-38231287111LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010692269.15e-99PREDICTED: LOB domain-containing protein 18
SwissprotO813231e-70LBD30_ARATH; LOB domain-containing protein 30
TrEMBLA0A0K9QPJ96e-93A0A0K9QPJ9_SPIOL; Uncharacterized protein
STRINGXP_010692269.12e-98(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.13e-71LBD family protein
Publications ? help Back to Top
  1. Rast-Somssich MI, et al.
    The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin.
    J. Exp. Bot., 2017. 68(11): p. 2741-2755
    [PMID:28472464]
  2. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]