PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca53064.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 569aa    MW: 61671.5 Da    PI: 8.3403
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca53064.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.47.8e-06519541325
                 S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                 +++C+ff  +  C+ G++C+F H
  Dca53064.1 519 RKPCKFFNSSKGCRNGPTCPFDH 541
                 789******************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.328516544IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-4519541IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6521550IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MVETRTSGSR SKEHSSSSKQ VRIPMIKWKC PPKIMLKSEW QVAAGEESRE RIAQKYREAR  60
ILEALYPRVS TIPSSPSVSP EAKSCDYDDS QTPIVPLTPI EEEIKDSMLV ESMPCSESVE  120
CNVPPESKAL SDVELHSTAA GFDADVHTAA TFALTALLKA NENGNMVDTD LLIKILKEPK  180
MVEALLNMRT TEIVSSVDSN HEAHAKLKSA VDTSFNPQTI QADSEIFGSN LNLRVSDLGS  240
SRPSSSVSST LETQVSIGSF RSHRSVSTPA IKLDNASSRP SSSVSSTLET QVSIGSFRSH  300
PSVSTPAIKL DNASSRPSSS VSSTLETQVS FGSFLSHPSV STPAIKLDNA SNIPRNAVPT  360
SSSAMFGSDL NPKIMDLKSF RPSPLFSSTK PNGQSLTRET LMFFHSLPSH SSVCTAASKA  420
VVPISGTHFP PKFDPLIPDF ISSQPTSMVS STRVEVQSLT PKSQMLTNSF TSHSSVDVRV  480
VKDANYYKNL VRLHGMVGNE THEHQPPECK VSAPEAKARK PCKFFNSSKG CRNGPTCPFD  540
HASLPNPQAG KFLDAFRSKR FKISHEITG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-