PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca43280.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C2H2
Protein Properties Length: 87aa    MW: 8652.43 Da    PI: 12.2108
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca43280.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.000391134123
                EEETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                y C  C + F +  +L++H +t H
  Dca43280.1 11 YFCRTCEEGFYTLAELTHHVNTcH 34
                78********************66 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.5591135IPR007087Zinc finger, C2H2
PROSITE patternPS0002801334IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.8E-41634IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MAGNDKSKMT YFCRTCEEGF YTLAELTHHV NTCHSTGARG RGRGGQGGGG RGRGGQGRGG  60
GGRGGRGRGG QGRGGGGRGG RGRGGRG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14250RGGQGGGGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-