PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca43032.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family YABBY
Protein Properties Length: 183aa    MW: 19921.5 Da    PI: 7.3424
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca43032.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY81.23.2e-2524135399
       YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas........qllaaeshldeslkee...........lleelkveeenl 82 
                   s s+q+Cyv+C+fC+t+lavsvPs++lfk+vtvrCGhC +l s n+ ka            + +++l++                llee ++++ nl
  Dca43032.1  24 QLSPSDQLCYVHCTFCDTVLAVSVPSSCLFKTVTVRCGHCGNLWSANMLKALllpsppptPPSPLSNNLQH----LppsnffssphnLLEEIRNTTPNL 118
                 56789****************************************99988873333332211122222222....134557776666666666666666 PP

       YABBY  83 ksnvekeesastsvsse 99 
                  +n+ ++++++  +s+ 
  Dca43032.1 119 MMNNNNNNNHQGMMSNC 135
                 66655555554444443 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.4E-2527126IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MSSSSSSTTT GSVGGPGFDT PDHQLSPSDQ LCYVHCTFCD TVLAVSVPSS CLFKTVTVRC  60
GHCGNLWSAN MLKALLLPSP PPTPPSPLSN NLQHLPPSNF FSSPHNLLEE IRNTTPNLMM  120
NNNNNNNHQG MMSNCNNNNE QGGGGGGGGM MMPMRGMEHH HQFHPFHHDI PKPPPVNRRM  180
FLY
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10457020, PubMed:12417699, PubMed:19837869). Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity (PubMed:10457020, PubMed:12417699). {ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:12417699, ECO:0000269|PubMed:19837869}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009375773.11e-36PREDICTED: axial regulator YABBY 1 isoform X2
SwissprotQ9XFB17e-24YAB3_ARATH; Axial regulator YABBY 3
TrEMBLA0A498JHG41e-34A0A498JHG4_MALDO; Uncharacterized protein
STRINGXP_010692186.17e-35(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00180.19e-21YABBY family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yadav RK, et al.
    Plant stem cell maintenance involves direct transcriptional repression of differentiation program.
    Mol. Syst. Biol., 2013. 9: p. 654
    [PMID:23549482]