PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca41372.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C2H2
Protein Properties Length: 930aa    MW: 102646 Da    PI: 8.2564
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca41372.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.1e-0587109123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C+ C+k F r  nL+ H r H
  Dca41372.1  87 FICEVCNKGFQREQNLQLHRRGH 109
                 89*******************88 PP

2zf-C2H213.10.00029163185123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C+k++  +s+ k H +t+
  Dca41372.1 163 FKCEKCSKRYAVQSDWKAHSKTC 185
                 89*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-586109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.98E-786109No hitNo description
PfamPF121714.9E-587109IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.005287109IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9987109IPR007087Zinc finger, C2H2
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
SMARTSM00355210128158IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.9E-5151184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.98E-7158183No hitNo description
SMARTSM0035588163183IPR015880Zinc finger, C2H2-like
PfamPF141111.4E-18708784IPR025558Domain of unknown function DUF4283
PfamPF143925.8E-8786833IPR025836Zinc knuckle CX2CX4HX4C
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 930 aa     Download sequence    Send to blast
MATSSSSTSF FGSRDGTTII QPPPPPQEPP QLHLQNHHLS VAEAPPSSSS TPPQKKIKRN  60
LPGAPLKYPD ADVILLSPRS LMATNRFICE VCNKGFQREQ NLQLHRRGHN LPWKLKQKNK  120
EAVRKKVYLC PETTCVHHDA ARALGDLTGI KKHYFRKHGE KKFKCEKCSK RYAVQSDWKA  180
HSKTCGTREY RCDCGTLFSR RDSFITHRAF CDALAQESAR LPTSLSTLGS HMFSTAGLTG  240
NNSIGLGMRL PHQMPNNNHL PSLSDHQMAS DILRLGGGSR QFDHLFTNSF QSQQQQQQQQ  300
QQQNIQSAQS NFYLSDGQSQ TDYHDQNNNQ LFHGQVNQMS NFQQESASTN PSFGNVRFYA  360
GNDNSTTDTN TMNSGSTGSG DHSSAILSPG AIGGLFGGPP QMSLSGGLSS LYRSCPSPHQ  420
QSAMSATALL QRAAKMGPTT STTNVNETAQ LKSFGAKTPP PPQQPSSPSG GGGGGGFRGL  480
YGEHDRNNLH DLLIRDLSRD NHLLMSSTTL FDHLQGNNNN NSLNYIGNEY INNYNYDGLN  540
SKNKSTKDGV TIALSDHQTR DFLGVGEIVR RSMNSGAGFT PRVEEQHHQC GHINNNMVPK  600
SPILLSSYVD AVLETTSVIT TKSAEGVQGV TTDVPIVVDD VATETVPVTE KKFGMSLFFC  660
EETAKLSEVN IEKEDIADEL ELWNRTLMGN ILGMRIQLQQ LKDYVYKAWN HVGNALLLKQ  720
WTPSFSQDLD HVSQVPVWVL LPALDPHFWS PVALSKIASK IGKPLYADQI TTTKARLGFA  780
RILVEIDVAE EVPEMVVVNT PFNERLTQTV EYEWIPYFCK TCKRLGHDTS KCKLNKPRME  840
YRPKVAETQE LPKPVEHTPP PGADVVDNLG FTAVKKGSVS RLKANASSMV LMNKFDQLQM  900
FETNTLEMVT GVGIQGSSGI DIPPVPPDKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-35159226369Zinc finger protein JACKDAW
5b3h_F3e-35159226369Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113125KLKQKNKEAVRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680044.11e-168PREDICTED: protein indeterminate-domain 5, chloroplastic
TrEMBLA0A0K9RP191e-164A0A0K9RP19_SPIOL; Uncharacterized protein
STRINGXP_010680044.11e-168(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-101indeterminate(ID)-domain 5