PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca38957.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C2H2
Protein Properties Length: 487aa    MW: 52931.3 Da    PI: 9.5538
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca38957.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.45.9e-06254276223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +C++Cg+ F+ ++ L++H  + H
  Dca38957.1 254 TCHKCGEQFNKWDALESHHLSnH 276
                 8*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.746253281IPR007087Zinc finger, C2H2
PROSITE patternPS000280255276IPR007087Zinc finger, C2H2
SuperFamilySSF563991.73E-20278486No hitNo description
Gene3DG3DSA:3.90.228.106.5E-8289463IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MESRSSNNNN GGSSKGGKEN NKPNVWFSLK KSLQCKSGPS DVHEPRSSSR KNNHNINNHS  60
SNNIYNSSNN SSSNYSINSI LTRKVGRSGC SRSIANLKDV IHGSKRHIEK PPSCSPRSIG  120
SSEFLNPITH EVILSNSRCE LKISGFGANF HDSLGSNNNN NNNNNNNSSN NNVGEGGGVG  180
STYVGTLRPG TPGPGGHPTM HYFNNPSFVR GAAASRKSFS MERDGGGGGG GGGGMGLRKR  240
FSLEIEANGC SNLTCHKCGE QFNKWDALES HHLSNHAVTE LVEGDSSRKI VEIICRTSWL  300
KSENHCGRIE RVLKVHNTQK TIARFEEYRE MVKNKASKLA KKHPRCLADG NELLRFYGTT  360
LGCSLGVDGS SSLCVSEKCC VCRIIRNGFY TKKEIKSGVG VFTTSTSERA FEGIDFPEND  420
TSMKKALIVC RVIAGRVHRP LENVQELAGQ TGFDSLAGKV GLYSNIEELF LLNPRALLPC  480
FVVICKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694273.10.0PREDICTED: uncharacterized protein LOC104907097
TrEMBLU5GX070.0U5GX07_POPTR; Uncharacterized protein
STRINGXP_010694273.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-127C2H2 family protein