PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca38582.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 147aa    MW: 16144 Da    PI: 7.596
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca38582.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.72.6e-106284527
                --SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                 C++f  tG+C+yGd+Ck++H++
  Dca38582.1 62 VCNRFVNTGFCPYGDSCKYHHPK 84
                6********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004510.001338IPR003604Zinc finger, U1-type
SuperFamilySSF576673.86E-14443No hitNo description
PfamPF062201.5E-8538IPR013085Zinc finger, U1-C type
SMARTSM003561.3E-45784IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4645785IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-76087IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-76288IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-86284IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MTVGKYYCDY CDKEFQDTSA ARKRHLQSIA HLRNRKLWYD SLSFSSDANQ LNVASHAFGK  60
GVCNRFVNTG FCPYGDSCKY HHPKHHLQGP AIEGASGTVG DSHVSEGGSL QGHVVRENFG  120
MSLGNLPPSL MPPPEGGYPS LPFIDWG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021734523.13e-71zinc finger CCCH domain-containing protein 3-like
SwissprotQ0JP112e-37C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A0K9RUW01e-67A0A0K9RUW0_SPIOL; Uncharacterized protein
STRINGXP_010674530.11e-64(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.11e-46C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]