PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca32039.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C2H2
Protein Properties Length: 521aa    MW: 54628.4 Da    PI: 7.578
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca32039.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-057092123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C+k F r  nL+ H r H
  Dca32039.1 70 FVCEICNKGFQRDQNLQLHRRGH 92
                89*******************88 PP

2zf-C2H211.80.00075146168123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C+k +  +s+ k H + +
  Dca32039.1 146 WKCEKCSKKYAVQSDWKAHSKIC 168
                 58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.38E-66992No hitNo description
Gene3DG3DSA:3.30.160.601.7E-56992IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0177092IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9497092IPR007087Zinc finger, C2H2
PfamPF121718.4E-57092IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SMARTSM00355230111141IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.6E-4134167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.38E-6141166No hitNo description
SMARTSM00355140146166IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MPADVDDTTM STTVSGGEAS VSSSGGGGDH TDTGPTPPPQ KKKRNQPGMP DPEAEVIALS  60
PKTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RSNKEVKKRV YVCPESSCVH  120
HDPSRALGDL TGIKKHFCRK HGEKKWKCEK CSKKYAVQSD WKAHSKICGT REYKCDCGTL  180
FSRRDSFITH RAFCDALAEE SARNHPPNGK NKPQPESKPP TLIPTPSLLP PPSPPPPAAP  240
QPQPPLPVPA AAAEPPAAAA TAVSPVLSVP NSVPELIDDP SPVLEEPSPP FAIVAAGING  300
NGSNSSSCSS VNSGNTSSSV FASLFASSTV SATLPSSNPN PGFSDFIQPM SQPECSPREL  360
PPPSSSEMIS LCLATNHGSS IFATAGQECR QYSPPQPVLS ATALLQKAAQ FGTAAGGGSL  420
LCGLGLMSST PSSAPSENLP WATRQIKPEN SSVGPGLGLG LHCDESSGLK ELMIGSSSMS  480
NQPTLDFLGL MTSIGGSLDM SAAATSYQGG EYAGNDLGRS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35142203364Zinc finger protein JACKDAW
5b3h_F2e-35142203364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021718487.10.0protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-161IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A067K9Z70.0A0A067K9Z7_JATCU; Uncharacterized protein
STRINGXP_010680830.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-107indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]