PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca25795.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 328aa    MW: 36690.1 Da    PI: 8.3229
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca25795.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.4e-087195126
                --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                ykt+ C  f+  G+Ck G++C+FaHg
  Dca25795.1 71 YKTRHCLKFRM-GQCKNGESCNFAHG 95
                89999*****9.*************9 PP

2zf-CCCH29.41.4e-09148171225
                 -S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                 k++lC++++ + +C+yG+rC+F H
  Dca25795.1 148 KMKLCKRYYNGEECPYGERCNFLH 171
                 789*******66************ PP

3zf-CCCH44.23.1e-14236262127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +kt++C+ f  tG+C++Gd+C+FaHg+
  Dca25795.1 236 WKTRICMKFETTGYCPFGDTCHFAHGQ 262
                 8************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.28E-868101IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-47096IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-1370103IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.147097IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-57195IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-7145174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272146174IPR000571Zinc finger, CCCH-type
SMARTSM003560.014146173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-8148172IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-7148171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-16232265IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-10233265IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-7235262IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.094235263IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-11236262IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSFSDQFTPY SKRVESVGFW PQAPASDEQI KTNSEIDHDP PSKRPKNFDD IKRSSPPLNP  60
PINQPNGRIF YKTRHCLKFR MGQCKNGESC NFAHGDDDLR QPPPNWQELV SGRTDERGGS  120
GGGNGNVNVN MNGTESWEEN DDDRIIHKMK LCKRYYNGEE CPYGERCNFL HKDPPTKFRD  180
VAPPPRFRDS SRESSAISIG TTGPPMVLDN YEISRIAGNG NVNGDALRGN SRPVYWKTRI  240
CMKFETTGYC PFGDTCHFAH GQAELLLPGS HPADLEPTVG KSAPLKHVPP PASDPTLVKT  300
GNVIHKSEIG LSKDPLLKWN PTKKMNRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858419.11e-133zinc finger CCCH domain-containing protein 39
TrEMBLA0A0K9R3T91e-131A0A0K9R3T9_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010676669.11e-126(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-62C3H family protein