PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca25726.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family G2-like
Protein Properties Length: 364aa    MW: 41033 Da    PI: 7.5207
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca25726.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.91.1e-333589155
     G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl
  Dca25726.1 35 KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 89
                79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-323290IPR009057Homeodomain-like
PROSITE profilePS5129412.8013292IPR017930Myb domain
SuperFamilySSF466891.79E-163490IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-233590IPR006447Myb domain, plants
PfamPF002492.7E-83787IPR001005SANT/Myb domain
PfamPF143797.9E-25133180IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010088Biological Processphloem development
GO:0010089Biological Processxylem development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MFHCKKPSSM NSNERSSSSM CVQNDSGLVL TTDPKPRLRW TVELHERFVD AVAQLGGPDK  60
ATPKTIMRVM GVKGLTLYHL KSHLQKFRLG KQPHKEFSDH PSVKDASGLE LQRNNPSSSG  120
LMGRSMNHHD GNVHITDAIR MQMEVQRRLQ EQLEVQRHLQ LRIEAQGKYM QNILEKACQT  180
LEGEANMVSD HLGVSLKEFG PPPPPMNFPS LQDLNIYGGD HQQQLDVVHH HNNMDRPPSF  240
ENFMQAPGDT LCLGNKKRPN NNNNNWNNHN NNNNNNNNNG KFPLVWEDLG PSNTCLGPQD  300
PFKADIQIAP PNPDRGIEHQ IDSISDIYES KSILSNDGGG VMDQKKYEVS PKLDRPSPRH  360
AYAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-193591258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-193591258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-193591157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-193591157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-193591157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-193591157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-193591258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-193591258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-193591258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-193591258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-193591258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-193591258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021850687.11e-167myb family transcription factor APL-like isoform X3
SwissprotQ9SAK51e-102APL_ARATH; Myb family transcription factor APL
TrEMBLA0A0K9RP231e-166A0A0K9RP23_SPIOL; Uncharacterized protein
STRINGXP_010683574.11e-152(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.21e-74G2-like family protein
Publications ? help Back to Top
  1. Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
    Vascular gene expression: a hypothesis.
    Front Plant Sci, 2013. 4: p. 261
    [PMID:23882276]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kondo Y, et al.
    Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
    Plant Cell, 2016. 28(6): p. 1250-62
    [PMID:27194709]
  4. Shibuta M,Abe M
    FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
    Plant Cell Physiol., 2017. 58(11): p. 2017-2025
    [PMID:29036620]