PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca25151.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ZF-HD
Protein Properties Length: 388aa    MW: 41839.3 Da    PI: 8.4328
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca25151.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.42.6e-3158111456
  ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRre 56 
                  + YkeClkNhAa++Ggh++DGCgEfmps++++ +++++lkCaACgCHRnFHRr+
   Dca25151.1  58 AGYKECLKNHAAAMGGHVLDGCGEFMPSHTATaTDPTSLKCAACGCHRNFHRRD 111
                  56**************************9999999******************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047706.7E-2659111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2160111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.6E-2960111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.01460111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.08E-16222289IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-28223291IPR009057Homeodomain-like
TIGRFAMsTIGR015653.5E-27230287IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MDMIATTNST ATPTSPSAAT TPTAIIDGVT LIPPVNGVLK RHQKPHHTSH HVVVAGAAGY  60
KECLKNHAAA MGGHVLDGCG EFMPSHTATA TDPTSLKCAA CGCHRNFHRR DGAPLVGGGG  120
ARVVEYHPQH RHHPPPPPSA AVAPASPGSD NQSPPPISSS YFPSSAGRML LALSSGGGNN  180
SVDEHDNNVK LNTHNQPPQQ QQPQQQQQQP QQQPQMILNS GMSSPNFSGR KRFRTKFSQE  240
QKEKMQEFAE KLGWKMQKST DELVKGFCNS IGVQRDVFKV WMHNNKNTFV KRSTPPPHHP  300
PPPHLHPTNY IITSAANHHE SPLINNINNS NINIQMKDDF EQVDDDDGNG VGNSHSSSVN  360
NSLSIGHLHH HLSNNGATTH TNASSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-202312881875ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693250.15e-74PREDICTED: zinc-finger homeodomain protein 9
TrEMBLA0A200QSE31e-69A0A200QSE3_9MAGN; ZF-HD homeobox protein
STRINGXP_010693250.12e-73(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.12e-46homeobox protein 30