PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca2487.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C2H2
Protein Properties Length: 121aa    MW: 13826.2 Da    PI: 7.8685
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca2487.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.94.5e-0789110223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                +C++Cg +F+ + +Lk+H+ +H
  Dca2487.1  89 TCEKCGACFKKPALLKQHMLSH 110
                6*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.47388113IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.6E-489112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MKIKGGQEVE ACWLVEKASL RFSSLFLVFS RPFDLVFSRL PSMPLYILME DAPTGEISRA  60
RGMTPVYRRH VSINEAKEVE DERLKSNNTC EKCGACFKKP ALLKQHMLSH SFEILELCES  120
V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.22e-09transcription factor IIIA