PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca22636.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family G2-like
Protein Properties Length: 344aa    MW: 35484.3 Da    PI: 7.1573
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca22636.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.42.1e-30127180155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Dca22636.1 127 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 180
                 59*******************.********************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.58E-20124184IPR009057Homeodomain-like
PROSITE profilePS5129411.059124183IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-30126185IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-24128180IPR006447Myb domain, plants
PfamPF002491.4E-7130179IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MREDDSSWFS KWEDELPSPE ELMPLSQTLI TPDLASALDI RGPGGGGGGG VVAPTTLFHH  60
HRHHNYGGQL QQQQQQQSSS AAAQAAPTHP NSSEFDSSSA ELGGGGGGGG GGGVGSELGE  120
PARTLKRPRL VWTPQLHKRF VDAVAHLGIK NAVPKTIMQL MSVDGLTREN VASHLQKYRL  180
YLKRMQGGGG GISGGGGNGP GGLGGTGDAA TDRLFASSPV PAHFLHQPAG GGAGGAGVGN  240
GHGHGPVAGP RPNADHFMSY VPVAALHQQQ IQAQYRQMGH FGAAPGGGGG TQFDHPFLSR  300
QAQLCPNRNG VVMQNSSGFV EDVETSAVAN SGRKVLTLFP TADD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-33127183157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021864004.11e-120transcription factor MYBC1-like
SwissprotO222102e-60MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A0K9QBX61e-119A0A0K9QBX6_SPIOL; Uncharacterized protein
STRINGXP_010673075.11e-115(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.15e-69G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]