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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca18828.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | G2-like | ||||||||
Protein Properties | Length: 446aa MW: 48714.1 Da PI: 6.8263 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.5 | 5.3e-32 | 281 | 336 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k r++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Dca18828.1 281 KSRRCWSPELHRRFLNALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 336 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.089 | 278 | 338 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-28 | 278 | 339 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.38E-18 | 279 | 339 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-27 | 281 | 336 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.9E-7 | 283 | 334 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0055062 | Biological Process | phosphate ion homeostasis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MMDFRNNMHK CQEYVHGLEE EKKKIQVFQR ELPLCLELVT QAIEACKQQL SGTITTAAAA 60 TTTTAEFNGN NSECSEQTTS EDGPILEEFI PLKTSHFNDD DDEEDHECNK PFNNINNNEK 120 SGKKSDWLRS VQLWNQTPDP STNQLQDIQP KKVAVVEVTK NGGSGGAFHP FKKEKICSNG 180 HGNVNMIMDI DINENNNNNT NNNNNNNNNI NVNNNNNNNN TVIDDNKDNK NTKPTSVPAV 240 SACSSAEAGE NGSGSGSGSG SGSGSGSRSK KEEKSEQSQR KSRRCWSPEL HRRFLNALQQ 300 LGGSHVATPK QIRELMKVDG LTNDEVKSHL QKYRLHTRRP SSSVQNNPNP QTPQPHFVVV 360 GGIWVPPPEY ATGGNTTAVH PSSNSIYTPV ATVASPSSLP KTSTVVSSPR QEPKLSNHSR 420 CGDRGSPSDG HDTSSSTHTT TASHAY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-14 | 281 | 334 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-14 | 281 | 334 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-14 | 281 | 334 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-14 | 281 | 334 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-14 | 281 | 334 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-14 | 281 | 334 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-14 | 281 | 334 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-14 | 281 | 334 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-14 | 281 | 334 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-14 | 281 | 334 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-14 | 281 | 334 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-14 | 281 | 334 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00218 | DAP | Transfer from AT1G68670 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010695844.1 | 1e-149 | PREDICTED: myb family transcription factor EFM | ||||
TrEMBL | A0A0J8B7X9 | 1e-147 | A0A0J8B7X9_BETVU; Uncharacterized protein | ||||
STRING | XP_010695844.1 | 1e-148 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25550.1 | 1e-43 | G2-like family protein |