PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca16537.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 709aa    MW: 78602.9 Da    PI: 5.513
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca16537.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.86.7e-07123145427
                 ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                 ++C ff++ G+C  G rC+F Hgp
  Dca16537.1 123 VPCVFFQQ-GFCLKGTRCPFLHGP 145
                 69******.*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.5213564IPR000571Zinc finger, CCCH-type
SMARTSM003560.0753663IPR000571Zinc finger, CCCH-type
PfamPF156633.7E-133790No hitNo description
SMARTSM003560.0996691IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.9116692IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.756119146IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-6119145IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-6120144IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4124144IPR000571Zinc finger, CCCH-type
PfamPF146080.12124144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MAPVIKELPE LAPPPSAAVT ATTTAAVTAV VDESLMRNTD CIYFLASPLT CKKGSECEYR  60
HCEAARNNPR DCWYWLNGNC LNSKCTFRHP PLDALAPPQA ANSVTPSPSI APSGTPVPSK  120
QAVPCVFFQQ GFCLKGTRCP FLHGPFPPTN HKIWPNPATA AATEAPTFKK SFGTPQTYTQ  180
TKTGFNSVPN VVEPIRQPQA NAAPKVVAAK QTVGGPAVKR SQPFGAVEQI PKSRETVPSP  240
IDRGSLRNRT ARVENQIHQN RRDVKDSLRE TSPGFDVLVD DKLEKDQYYH DEDEYVTMRG  300
REGRRIDEFN IGRHDHYNSV AGGDLDDYRH KHGYDSYNDL QDDYRRAHRG ASSERLTDRD  360
RRGQYKSENP GYDQNSSDLR HRLLKQRRGN DLRSVVSPDY KPNYHPDDRE YRGSRRDARS  420
PTRDRSIGSR LQGRIKLPRT SPPATDNDRG RSSGRFSPSR LPASTHQGRL RDRLGGRRQD  480
ESNESGIFRA QTRNDSTSQA NGTEFAGRKR LSELRGAGRS EGDASFDAPK PLSEILKRKR  540
KEGMTASTGV VNSDSKELKQ NENYVNSITT VADPAADTAK QAAPSSAAKQ TPADDLQENN  600
KSVVAEGGEE EAGEISNKKV KLIDDEPSLP NDDKHAEAEE GQFGGDVEEH EGDEEYDQGD  660
GEYDYEQEDD VEGYDLNEGE VDVGDVAENE DFMDEDDGDD FAKKLGVSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680041.10.0PREDICTED: zinc finger CCCH domain-containing protein 17
TrEMBLA0A0K9QEN30.0A0A0K9QEN3_SPIOL; Uncharacterized protein
STRINGXP_010680041.10.0(Beta vulgaris)