PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca12625.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C2H2
Protein Properties Length: 547aa    MW: 60504.7 Da    PI: 8.5443
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca12625.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55e-055878323
                ETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                C++Cgk F r  nL+ H r H
  Dca12625.1 58 CEICGKGFQRDQNLQLHRRGH 78
                *******************88 PP

2zf-C2H213.20.00027132154123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C+k +  +s+ k H +t+
  Dca12625.1 132 WKCEKCNKKYAVQSDWKAHSKTC 154
                 58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.9E-55578IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.08E-75578No hitNo description
PROSITE profilePS5015711.4895678IPR007087Zinc finger, C2H2
SMARTSM003550.0765678IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
SMARTSM0035515097127IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.7E-5120153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.08E-7127152No hitNo description
SMARTSM00355100132152IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MGDQEANSNG FVVETPLIVG SNDLPLKKKR NLPGNPDPEA EVIALSPKTL MTTNRFLCEI  60
CGKGFQRDQN LQLHRRGHNL PWKLKQRTSK EPRKRVYICP EKACVHNHPS RALGDLTGIK  120
KHFFRKHGEK KWKCEKCNKK YAVQSDWKAH SKTCGTREYK CDCGTIFSRR DSFITHRAFC  180
DALAEETARM NAANAHHFSL NTLGTLNNNL NYHFVGSNPT TPAMAMSQHF SSIFKPLPSS  240
TTTTTKDESE TLDLQNQRAL LPLWLGNQLT PSTRPTYEHT LHGPTNNNIS INDNNNNNNN  300
SYMMHHQLHN NPNFNSFHNS QNIPVMLVPG LNPPPPDSNN YSQLNWGFGT KTSPTTQPNN  360
NNNNGGELGA ITSNIPPNTN NNNTSSIPCL YSTQQIHHQT SSTSNSSHFM SATALLQKAA  420
QIGATSTTTT NDALFLGSFG LMKENNNNNN NNNNNNNNGN GDGSVYGTSN STTTNFESDL  480
EGSGSVDDLS TMTTLYHNPS KRQKLHEDHQ DNSHYVGGVG SVGGQTRDFL GVSSQTNCHP  540
TSINGWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-35128192367Zinc finger protein JACKDAW
5b3h_F1e-35128192367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021733369.10.0zinc finger protein NUTCRACKER-like isoform X1
SwissprotQ9ZWA61e-118IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A2C9UTQ81e-169A0A2C9UTQ8_MANES; Uncharacterized protein
STRINGXP_010689779.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-105C2H2 family protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]