PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca12416.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 271aa    MW: 29408.9 Da    PI: 8.8888
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca12416.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH44.62.3e-14110136127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 yktelC+ +  +G+C+yG++C+FaHg+
  Dca12416.1 110 YKTELCKSWEDSGYCRYGSKCQFAHGQ 136
                 9************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.1E-18107141IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-10109140IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-8109136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.746110137IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-11110136IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MSTYFTSNTN FQNDCVSPIT PPAPIPSLSS ENPFVLKYLR SSLPSDYSSP YLGHPIMNYY  60
RGNITGSGGS SSGSNRTPLS PLVRMEEDML VMDGVLIEPK SSSISSGSHY KTELCKSWED  120
SGYCRYGSKC QFAHGQEELR SFPNRQRNMK KLEQLQVNKP KHSPSSSSAS PRNAVSPNHT  180
ATTPGTSSAS STQKLAITPG TSLSSTTSKP TNPSPLLSKN WSPMDDGITI SLPGSTDKAP  240
ATADVDRYIN NVLYGPTSRK RLPVFLEICP E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-08C3H family protein