PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca11616.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C2H2
Protein Properties Length: 292aa    MW: 31604.1 Da    PI: 5.0784
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca11616.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00018267289223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +C+ C+k+F++   L++H +  H
  Dca11616.1 267 SCGSCKKTFKSDVALQSHSKAkH 289
                 6*****************88777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.556266292IPR007087Zinc finger, C2H2
PROSITE patternPS000280268289IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MVVVSMKVAT FWFWKVSYKH FSCVEVKGKE PCKVTIDQGS IIHLSQATLG EVKKDKETVI  60
VHVKVGDKKL VLGMLSQENP HLSFDLVFDE EFEITHSWKN GTVHLLGYQT DVHDQGVEFT  120
DSEDEEEEVP VAKENGQVPV AAGKALAAKP KADAKPKTDD SDEDDSAEDD GSSADEDDTD  180
EEMGSDSDDE EESEDEKPAP VANSGKKRPT PDVKTPPQPK KAKIATPTPQ KTDGKKGGVV  240
HPSTPHPSKK GAKTPEKSPK SGGSEVSCGS CKKTFKSDVA LQSHSKAKHG DK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690019.15e-62PREDICTED: histone deacetylase HDT1
STRINGXP_010690019.12e-61(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.22e-26histone deacetylase 3