PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_031927
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family FAR1
Protein Properties Length: 459aa    MW: 53393.8 Da    PI: 8.251
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_031927genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1241.2e-071326090
         FAR1 60 tgCkaklkvkkek.dgkwevtkleleHnHela 90
                 +gCk ++ v ++k +++we+t+leleHnHe++
  DCAR_031927  1 MGCKVRMDVVNKKkSSHWEITSLELEHNHEVV 32
                 58*****8776666***************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.5E-5232IPR004330FAR1 DNA binding domain
PfamPF105511.3E-31155248IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MGCKVRMDVV NKKKSSHWEI TSLELEHNHE VVTPSKMSLI RRERHVTAAQ RNLIKTLHAS  60
GVPPRQQMNI FGQMHGGAEQ VGFNSQHLRN VVRDFRKDNM GVNDAQAGLD LLYRLKEESG  120
GKFFIKTLLD DEQRLKCLVW VDPCSMMAYR NFGDVVVFDT TYRTNRYAMP FVLFTGVNHH  180
YQSILFGFAL VRDELKTTFE WVLSTWLEAM EDKEPLAIII DQDQAMTVAI ESQLPNTSHL  240
LCSWHISNKF PEKLATYYSK EGFKFDFNNC IYHSLTEVVF EDRWKALILK YNLEGNTWLQ  300
GLYALKHKWV EAYTRNTFSA GQKTTSRSEG MNAYFDAYVG SCTGLKDFVE GAQKALERQF  360
MREKDEDYNT YHRSRCMQMK TALEHHAASI YTKEMFRRFQ EQLVEANKYF VAKDRDRSLE  420
DVEDTFYKCY RPLTGASQRT TYLVSFNKAS LWGSCICR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017217181.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A164TK400.0A0A164TK40_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-96FAR1-related sequence 5