PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_031455
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 240aa    MW: 26674.4 Da    PI: 10.4101
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_031455genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00051158180223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +C  Cg++F++++ L  H r  H
  DCAR_031455 158 SCRVCGRRFRSREKLGGHFREvH 180
                  6**************99988877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF055624.8E-4514144IPR008892Cold-regulated 413 protein
PROSITE profilePS5015710.346157185IPR007087Zinc finger, C2H2
PROSITE patternPS000280159180IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009631Biological Processcold acclimation
GO:0009737Biological Processresponse to abscisic acid
GO:0042631Biological Processcellular response to water deprivation
GO:0070417Biological Processcellular response to cold
GO:0009535Cellular Componentchloroplast thylakoid membrane
GO:0031357Cellular Componentintegral component of chloroplast inner membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MNIKGGFGTS VCSYSPLSSL NLQWINTITS TVLMLLSGTS IQKSFLVPIF ALQAPASIIS  60
WIKGEYGVWT AFLLLLVRLF LHIPGELELP FSALLIVLVA PYQILNLRGK LEGVILSLTI  120
AGYLAFQHFS RGGSLGKAFD QVALVEAHCE MGVGYWNSCR VCGRRFRSRE KLGGHFREVH  180
VLDERRRLRK VEFAKEGSRN RLVGKFLMEI REIRNAVRGV LIVGNCLKAT NRTEASYSI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184189RRRLRK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in response to abscisic acid (ABA), cold, freezing and drought treatments. {ECO:0000269|PubMed:12746512, ECO:0000269|PubMed:18643950}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017227488.11e-95PREDICTED: cold-regulated 413 inner membrane protein 1, chloroplastic-like isoform X2
SwissprotQ94AL84e-56CRIM1_ARATH; Cold-regulated 413 inner membrane protein 1, chloroplastic
TrEMBLA0A175YBJ61e-172A0A175YBJ6_DAUCS; Uncharacterized protein
STRINGXP_010540531.12e-64(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.18e-12C2H2 family protein
Publications ? help Back to Top
  1. Breton G,Danyluk J,Charron JB,Sarhan F
    Expression profiling and bioinformatic analyses of a novel stress-regulated multispanning transmembrane protein family from cereals and Arabidopsis.
    Plant Physiol., 2003. 132(1): p. 64-74
    [PMID:12746512]
  2. Okawa K,Nakayama K,Kakizaki T,Yamashita T,Inaba T
    Identification and characterization of Cor413im proteins as novel components of the chloroplast inner envelope.
    Plant Cell Environ., 2008. 31(10): p. 1470-83
    [PMID:18643950]
  3. Wang ZY,Xiong L,Li W,Zhu JK,Zhu J
    The plant cuticle is required for osmotic stress regulation of abscisic acid biosynthesis and osmotic stress tolerance in Arabidopsis.
    Plant Cell, 2011. 23(5): p. 1971-84
    [PMID:21610183]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]