PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_030739
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 151aa    MW: 16552.9 Da    PI: 5.2837
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_030739genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.7e-191768256
          AP2  2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkklege 56
                 +y+GVr+++ +g+++AeIrd       + +r++lg+f tae+Aa+a+++a+ +++g+
  DCAR_030739 17 RYRGVRRRP-WGKYAAEIRD----SarQGARVWLGTFNTAEDAARAYDRAAYSMRGH 68
                 69*******.**********....33334**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.9E-311777IPR001471AP2/ERF domain
CDDcd000181.55E-181776No hitNo description
SMARTSM003801.1E-331781IPR001471AP2/ERF domain
PROSITE profilePS5103223.6171775IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-231776IPR016177DNA-binding domain
PfamPF008471.7E-141768IPR001471AP2/ERF domain
PRINTSPR003671.6E-111829IPR001471AP2/ERF domain
PRINTSPR003671.6E-114157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MSEGMPNNNA NNTTELRYRG VRRRPWGKYA AEIRDSARQG ARVWLGTFNT AEDAARAYDR  60
AAYSMRGHLA VLNFPEEYNL PSGGLSDHFS GYSASASGSG SGSGSSSSSA MQGSNEEGKE  120
VIEFEYLDDQ VLEDLLDFDQ PKNNNRRKNK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-351714814131Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017226135.11e-107PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC56e-40ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A175YIV41e-106A0A175YIV4_DAUCS; Uncharacterized protein
STRINGSolyc03g005500.1.12e-46(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.11e-30Ethylene-responsive element binding factor 14
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]