PlantRegMap
Plant Transcription Factor Database
PlantTFDB
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_030476
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GRAS
Protein Properties Length: 756aa    MW: 85568 Da    PI: 5.6734
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_030476genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS262.11.9e-803827531374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl....fsevsPilkf 93 
                  lv+ Ll  Ae v  ++  +a++lL     l+sp+g+p+qRl+ yf++AL++++++++  + + +   ++    +++e+l++ +     f++  P+ ++
  DCAR_030476 382 LVQILLMSAEKVGRQQYDCASKLLDLCDGLSSPEGNPVQRLVYYFVKALREKIYHETGVIPSNClDIKHFF--DVKEALMSPTPtvisFHKEVPFSQI 477
                  68999*************************************************95444433332444444..355555544324566********** PP

         GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                   +++  q I+e v +++rvHiiD++i  G+Q + L+qaL +R+ ++  ++++T++g    +ske++eetg+rL  fA ++++pf+fnv+++ ++ +l+
  DCAR_030476 478 NQFIGVQVIVENVGEAKRVHIIDLEIRSGMQCMVLMQALVNRRqSPLDHFKVTALGT---KSKEKIEETGRRLMTFAMSMNIPFSFNVIMVADMLALN 572
                  ****************************************88835566*********...68************************************ PP

         GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                   + + ++p+E++aV +++ l +ll+ + +le     ++ ++++++P ++v++e ea+hns+ F++rf+eal +y ++fd++e  +++++ +r + E +
  DCAR_030476 573 KSLFTLDPREVVAVVSSYYLWTLLAVPNQLEC----LMGVIRKINPCIMVITEVEAKHNSPVFVNRFTEALFFYGVFFDAVEDCMGHKNPNRLTTESM 666
                  ************************88777777....************************************************************** PP

         GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +l++ i+ +va+e++er+ rh + + Wr+ + ++ + + +ls +   qa+l+l++++ s+  ++  +++ l++gWk+ p+ s++ W+
  DCAR_030476 667 FLNQGIRTIVAAEKEERTIRHVSIAVWRAFFARFRMVEKQLSMSSLYQADLVLKNFScSNSCTLVRDEKGLIIGWKGTPVHSLTTWK 753
                  **************************************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.529356732IPR005202Transcription factor GRAS
PfamPF035146.6E-78382753IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MSEILPIEQL SFTEIYNHCN NFQTHEWGMS KEVKYENQSV KEEFFSSDPL QEQPVEFFSE  60
IKGFDESFSD IKYLPVEQCH KVRKISNGQR MAGAESVRET TRTIPLAGLE ILNNYGSRFS  120
LSHGEMEIAS SYEIAQTKVG VRQLTTDGIL RLAGEKFIRS CSPRNADLSL LVGPISSSFP  180
CLTDDEVNDV ELVQILLMSA EKVGXTWLHF EPLTHEWGMS KEVKYENQSV KEEFFSSDPL  240
QEQPVEFFSE IKGFDESFSD IKYLPVEQCH KVRKISNGQR MAGAESVRET TRTIPLAGLE  300
ILNNYGSRFS LSHGEMEIAS SYEIAQTKVG VRQLTTDGIL RLAGEKFIRS CSPRNADLSL  360
LVGPISSSFP CLTDDEVNDV ELVQILLMSA EKVGRQQYDC ASKLLDLCDG LSSPEGNPVQ  420
RLVYYFVKAL REKIYHETGV IPSNCLDIKH FFDVKEALMS PTPTVISFHK EVPFSQINQF  480
IGVQVIVENV GEAKRVHIID LEIRSGMQCM VLMQALVNRR QSPLDHFKVT ALGTKSKEKI  540
EETGRRLMTF AMSMNIPFSF NVIMVADMLA LNKSLFTLDP REVVAVVSSY YLWTLLAVPN  600
QLECLMGVIR KINPCIMVIT EVEAKHNSPV FVNRFTEALF FYGVFFDAVE DCMGHKNPNR  660
LTTESMFLNQ GIRTIVAAEK EERTIRHVSI AVWRAFFARF RMVEKQLSMS SLYQADLVLK  720
NFSCSNSCTL VRDEKGLIIG WKGTPVHSLT TWKFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-343877538375GRAS family transcription factor containing protein, expressed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017225357.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A175YHP80.0A0A175YHP8_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34272149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.18e-53RGA-like 2