PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_029665
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 301aa    MW: 33578.7 Da    PI: 7.7066
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_029665genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00026221243123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C +C+k F  k + ++H +++
  DCAR_029665 221 FMCRKCSKAFAVKGDWRTHEKNC 243
                  89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.37E-6207241No hitNo description
Gene3DG3DSA:3.30.160.605.1E-5208241IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAEPYSNFFT GGWYNFVPLQ QHYSQPQNQS FPPPHSPPLS EKEALPLLNK LTRNNQEPSS  60
SSSSCFSIDV GQNNDGHLSS ASDRVDESMN VTLNIGLPSP SFSSTHLEPT SEEKSEGGVD  120
VLLGLPLNRL NKGQYWIPNP SQILIGPNQF SCPMHMWGHG SQYRKGPDSL KGTQPTAMLR  180
LPCYCCAPGC KHHIDNPRSR PLKDFRTLQT HYKRKHGIKP FMCRKCSKAF AVKGDWRTHE  240
KNCGKIWYCF CGSDFKHKRS LKDHIKAFGR GHGAVGIDCL DEEDEAVSDN EIEQDGESSV  300
*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017224332.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-104ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A175YGV40.0A0A175YGV4_DAUCS; Uncharacterized protein
STRINGGLYMA12G36660.21e-126(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-105C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]