PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_029463
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 202aa    MW: 22927.3 Da    PI: 4.3317
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_029463genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.5e-1990141256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  +y+GVr+++ +g+++AeIr p ++g  +r++lg+++t+e+Aa a+++a+ k++g+
  DCAR_029463  90 RYRGVRRRP-WGKFAAEIRNPAKRG--ARIWLGTYDTPEDAALAYDRAAFKIRGA 141
                  8********.**********97765..*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.42E-3289148No hitNo description
PROSITE profilePS5103224.40890148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-3190149IPR001471AP2/ERF domain
SMARTSM003809.1E-3690154IPR001471AP2/ERF domain
PfamPF008476.6E-1490140IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2390149IPR016177DNA-binding domain
PRINTSPR003672.3E-1091102IPR001471AP2/ERF domain
PRINTSPR003672.3E-10114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MTSYNLPDPD FSALESIRQH LLEDADNFDT ITSSDPLVYE RNLSFGSTDS GGTDSVEDYT  60
MEWMDMLRDA DAKQDFVQEL SAEKQPEWKR YRGVRRRPWG KFAAEIRNPA KRGARIWLGT  120
YDTPEDAALA YDRAAFKIRG ARAKVNFPKL LVPDLSQKFD VDANRLTSEP ESSTSYNHSP  180
GENLEEMFTL TDEDLLLIDS L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2889148160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-2889148463ATERF1
3gcc_A1e-2889148463ATERF1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017225948.11e-147PREDICTED: ethylene-responsive transcription factor 13-like
TrEMBLA0A175YF081e-145A0A175YF08_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-33ethylene-responsive element binding factor 13