PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_028875
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GRAS
Protein Properties Length: 542aa    MW: 61738.9 Da    PI: 4.4982
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_028875genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS146.52.7e-451755402374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayft.eALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                   +l+++  +a+++g+++la+a+++++++++s  g+ m+Rl +y+    L++  ++        l+++       ++  aa+ +f++++P+ kf+h++a
  DCAR_028875 175 FHLVMAYGQAIENGHNALAKAVVKHMNQTVSLVGNIMERLLHYVFsVDLKSDYLK--------LECK-------KNFYAAYMAFYQIFPYGKFAHFAA 257
                  58899999**********************************9640345555554........4444.......457899999*************** PP

         GRAS  99 NqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                  N+aIl+av+++ + +Hi Dfd++ GlQW ++++aL     ++ +lR+T+++  e +     ++ + eet++rL +  ++++v+++ + ++++++ +l+
  DCAR_028875 258 NSAILKAVHENvKIIHIYDFDLGDGLQWCSMIEALRG---QQRELRLTAIKWTEGEstcipQEWKFEETKRRLIDHSSSCNVDLKVDEMMMHDFIELK 352
                  ***********8888*******************965...5678******99766688999999***********************98777776665 PP

         GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLk....lvkslsPkvvvvveqeadh...nsesFlerflealeyysalfdsleaklpres.e 280
                    + r ++gE  a n++ +l ++   ++ ++++ +e+L+    +++++ + ++++ + +a      s++F   +   l +y al++s+e ++p +  e
  DCAR_028875 353 KIKSRGDNGEWCAFNCMTSLPHMG--RARSRKNVTEFLNgakeIIRHTHSGIIIFGDGDAWEkqkMSSNFTSFLDGHLMHYEALLESIEFNFPVHLkE 448
                  55556667***************8..44444558999974444688899********99644222667999999999****************98846 PP

         GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                  +r+ +E  ++++ ++     ++ e + ++  l    e  + +G+k  ++se+  ++ak ++++ +   g +v+ e +++lvl W++ +Lv vS+W+
  DCAR_028875 449 ARTLMECLFVAPFASAHAQIQKWEETRECCDL----ESAGLSGLKGRKVSEESLMEAKEMIKEGEsLYGIKVQgEFNNQLVLDWRGTELVKVSCWQ 540
                  66667777666666666666666644334333....5688999********************9988899999666*******************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.033148518IPR005202Transcription factor GRAS
PfamPF035149.2E-43175540IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MFEPAMLQVQ PSLLYSDSLT SFTDDEVRLY EFEFDAQNLG SQDFSSLDTT PQSSPDFCFS  60
IQDLDNMDFQ VDQPGVMLST DHFSTVYDEQ NVIFTGEIDD MLLYSMDGEE SFVDVQQSTL  120
DAEDEWSLNP SMDATDFLMH LPNGGIEVNN HVALIQPSLD LPTEGVEIDL RLVLFHLVMA  180
YGQAIENGHN ALAKAVVKHM NQTVSLVGNI MERLLHYVFS VDLKSDYLKL ECKKNFYAAY  240
MAFYQIFPYG KFAHFAANSA ILKAVHENVK IIHIYDFDLG DGLQWCSMIE ALRGQQRELR  300
LTAIKWTEGE STCIPQEWKF EETKRRLIDH SSSCNVDLKV DEMMMHDFIE LKKIKSRGDN  360
GEWCAFNCMT SLPHMGRARS RKNVTEFLNG AKEIIRHTHS GIIIFGDGDA WEKQKMSSNF  420
TSFLDGHLMH YEALLESIEF NFPVHLKEAR TLMECLFVAP FASAHAQIQK WEETRECCDL  480
ESAGLSGLKG RKVSEESLME AKEMIKEGES LYGIKVQGEF NNQLVLDWRG TELVKVSCWQ  540
S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017221126.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A175YJR30.0A0A175YJR3_DAUCS; Uncharacterized protein
STRINGXP_002526659.11e-133(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53611938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-17GRAS family protein