PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_027766
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 231aa    MW: 25329.4 Da    PI: 6.7445
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_027766genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.9e-1957108156
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+ +++g+
  DCAR_027766  57 PVYRGVRIRS-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAAIAIKGH 108
                  68*****888.**********843...6**********************999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.0E-1357108IPR001471AP2/ERF domain
SMARTSM003801.7E-3558121IPR001471AP2/ERF domain
PROSITE profilePS5103222.358115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-3158116IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-2158116IPR016177DNA-binding domain
PRINTSPR003677.7E-105970IPR001471AP2/ERF domain
CDDcd000184.70E-3159117No hitNo description
PRINTSPR003677.7E-108197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MPPPHCVMKE KISIPSSQHS EKDLVTRRSG KRSFQNASDE MIKKSEKCSS ASDGKHPVYR  60
GVRIRSWGKW VSEIREPRKK SRIWLGTFAT PEMAARAHDV AAIAIKGHSA FLNFPELAHQ  120
LPQPASKSPK DIQAAAAQAA AMNNVPSHEA EAEAELSGAE ATTTTITSDS SGESSSTSPI  180
SHIEDPFLDL PDLYLNLGHK IGHSIHEFPW SLARAETVDS ELWLDEPFLW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-17561151272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12632RRSGKRS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017222023.11e-168PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ71e-46ERF34_ARATH; Ethylene-responsive transcription factor ERF034
SwissprotQ9ZQP31e-47ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A175YPR21e-168A0A175YPR2_DAUCS; Uncharacterized protein
STRINGEOY242818e-59(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-34ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]