PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_027671
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 182aa    MW: 20355.2 Da    PI: 8.02
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_027671genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00164668123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C+ C++ F++   L  H  +H
  DCAR_027671 46 FECKTCNRQFPSFQALGGHRASH 68
                 89**********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.15E-844117No hitNo description
PfamPF139123.0E-134570IPR007087Zinc finger, C2H2
SMARTSM003550.164668IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8274673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
PfamPF139124.5E-1094119IPR007087Zinc finger, C2H2
PROSITE profilePS501579.6695122IPR007087Zinc finger, C2H2
SMARTSM003550.595117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MVYFSLKRDR EAEHFDESIT NMANYFILLS RGNIVIDNSP TAARVFECKT CNRQFPSFQA  60
LGGHRASHKK PRLMGLDPLE DHEQEELSPA KPKVHECSIC GLEFAIGQAL GGHMRRHRGG  120
GSGSPTVNEK INHLIPVVKK SNSRRIMSLD LNLTPLENDI EFRLGIEERR TDSLTITSGK  180
E*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017222136.11e-133PREDICTED: zinc finger protein ZAT11-like
TrEMBLA0A175YNH01e-131A0A175YNH0_DAUCS; Uncharacterized protein
STRINGXP_009593204.18e-62(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-33C2H2 family protein