PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_027598
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LBD
Protein Properties Length: 216aa    MW: 23600.4 Da    PI: 6.4001
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_027598genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.61e-3871071100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC+++Cv+apyf  +q +++fa vh++FGas+v+kll +lp ++r+da+++++yeA ar++dPvyG+v+++++lqqq+++l++e++ l
  DCAR_027598   7 SCGACKFLRRKCTSECVFAPYFSYDQsANHFAKVHRVFGASKVSKLLLHLPVHRRSDAAATIAYEALARMHDPVYGCVSHVFALQQQVACLQHEIDIL 104
                  6***********************9978*******************************************************************999 PP

       DUF260  98 kee 100
                  +++
  DCAR_027598 105 NNQ 107
                  887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.0266108IPR004883Lateral organ boundaries, LOB
PfamPF031956.6E-377104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MTGPGSSCGA CKFLRRKCTS ECVFAPYFSY DQSANHFAKV HRVFGASKVS KLLLHLPVHR  60
RSDAAATIAY EALARMHDPV YGCVSHVFAL QQQVACLQHE IDILNNQMAN QAFQARNNGA  120
FGATNNPSVG FQFDSQNNEN MTNCATQSQM LLNGGVTADN QEFHCQINTT LPTLYGCEEH  180
MYNVPSDIDL PESVSGGMNQ EIYVPFLWTG SSCSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3531127115LOB family transfactor Ramosa2.1
5ly0_B2e-3531127115LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017222340.11e-162PREDICTED: LOB domain-containing protein 33-like
SwissprotQ9LHS82e-52LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A175YNZ91e-161A0A175YNZ9_DAUCS; Uncharacterized protein
STRINGVIT_13s0019g02060.t018e-72(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127691521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.17e-55LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]