PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_026614
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 353aa    MW: 39345.1 Da    PI: 6.5118
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_026614genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.6e-19187235355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  ++GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+g
  DCAR_026614 187 FRGVRQRH-WGKWVAEIRLPKN---RTRVWLGTFDTAEEAAVAYDTAAYLLRG 235
                  8******9.**********965...5**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.54E-32185245No hitNo description
SuperFamilySSF541712.88E-22186244IPR016177DNA-binding domain
SMARTSM003803.8E-37186249IPR001471AP2/ERF domain
PROSITE profilePS5103222.352186243IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-32186244IPR001471AP2/ERF domain
PRINTSPR003678.2E-11187198IPR001471AP2/ERF domain
PfamPF008477.1E-12187235IPR001471AP2/ERF domain
PRINTSPR003678.2E-11209225IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDKQYPKLET FLPKELMLPS YFQEMVPGSQ NFTDHSGWNF LQSSSESDSP VDDKSSVATL  60
STCNVADLEK TKFSSGSSCI PLTFLESFPQ LHQVSHDHAS EQGSSSSSTD MKFQNLGLFL  120
NDPSVLNDVP SFQRNDQASS ECLKINENLL ASYTPEGLSD YWLSTTKTQA MKSSGRRMQK  180
PSFTKLFRGV RQRHWGKWVA EIRLPKNRTR VWLGTFDTAE EAAVAYDTAA YLLRGDYAHL  240
NFPEQKHQLK ANSLNGSTAA LLEAKLQAMS GNKKASDCRS ATSKKTCEET RTINNCQVEE  300
FKGKSGMISH EKNKKPQEVF CAENINGVDQ LSRVPSLDMD MIWDALLVSS DS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20185243160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017222084.10.0PREDICTED: ethylene-responsive transcription factor ERF062-like
TrEMBLA0A175YQG40.0A0A175YQG4_DAUCS; Uncharacterized protein
STRINGGorai.011G157500.11e-86(Gossypium raimondii)
STRINGXP_006420915.16e-87(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA109211825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.14e-61ERF family protein