PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025941
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 82aa    MW: 9197.54 Da    PI: 5.7945
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025941genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.7e-091260147
                     TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     + +WT e  +l+ +a +++ ++   +W +Ia+  g gR+ +++k  +qk+
      DCAR_025941 12 KSNWTIEQNKLFENALAMYDKDtpdRWMKIANATG-GRSVEEIKMQYQKL 60
                     679********************************.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-5661IPR009057Homeodomain-like
PROSITE profilePS500906.853761IPR017877Myb-like domain
SMARTSM007171.4E-61163IPR001005SANT/Myb domain
SuperFamilySSF466895.83E-131268IPR009057Homeodomain-like
PfamPF002496.4E-71260IPR001005SANT/Myb domain
CDDcd001674.45E-51461No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MSLDLLSSSC SKSNWTIEQN KLFENALAMY DKDTPDRWMK IANATGGRSV EEIKMQYQKL  60
VHDIALIEAG KVPLPNQWLN A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-24576172RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440477.12e-28PREDICTED: protein RADIALIS-like 3
RefseqXP_016684660.12e-28PREDICTED: protein RADIALIS-like 3
RefseqXP_016752914.12e-28PREDICTED: protein RADIALIS-like 3
RefseqXP_017605578.13e-28PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1736e-26RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A164UGU92e-53A0A164UGU9_DAUCS; Uncharacterized protein
STRINGGorai.009G273300.19e-28(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.25e-27RAD-like 6