PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025934
Common NameAREB1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bZIP
Protein Properties Length: 309aa    MW: 32208.3 Da    PI: 5.6977
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025934genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.65.6e-13249283135
                  XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekv 35 
                  e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ + 
  DCAR_025934 249 ERELKRQKRKQSNRESARRSRLRKQAECEELQGRE 283
                  89******************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.8E-241182IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1701.2E-11244283No hitNo description
SMARTSM003384.3E-5249308IPR004827Basic-leucine zipper domain
PfamPF001709.6E-12249285IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.864251282IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.55E-7252285No hitNo description
CDDcd147023.22E-16254284No hitNo description
PROSITE patternPS000360256271IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MIYLPRGIDE EVQTPPSYPD WSSSMQAYYG AGAAPAFYAS TVAPPTPHPY MWGGQHPLMP  60
PYGTPIPYPV YPPGGMYAHP SIATNPSMVP TAESEGKAVD GKDRNPTKKS KGASGNASSG  120
GGKAGDSGKA ASSSGNDGGT QSAESGSDGS SDGGSDENTN HEFSTGKKGS FHQMLADGAS  180
AQNTVAGSVP GNALVSVPAA NLNIGMDLWN ASPAGNGSLK VRQNPSAAVV PGTVMGRDAM  240
MPDQWVNDER ELKRQKRKQS NRESARRSRL RKQAECEELQ GREELIRVYG ADEVSKLGIQ  300
SFDDGGDS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265271RRSRLRK
2265272RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4332920.0EU433292.1 Daucus carota isolate WD966403 ABA response element-binding factor 1 (AREB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017219324.10.0PREDICTED: G-box-binding factor 1-like isoform X2
SwissprotP427741e-67GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A161Y8T20.0A0A161Y8T2_DAUCS; Uncharacterized protein
STRINGXP_004143501.11e-124(Cucumis sativus)
STRINGXP_004172454.11e-124(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37802446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.19e-48G-box binding factor 1
Publications ? help Back to Top
  1. Guan Y,Ren H,Xie H,Ma Z,Chen F
    Identification and characterization of bZIP-type transcription factors involved in carrot (Daucus carota L.) somatic embryogenesis.
    Plant J., 2009. 60(2): p. 207-17
    [PMID:19519801]
  2. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  5. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  6. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  7. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]