PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025650
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 268aa    MW: 29723.2 Da    PI: 6.3906
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025650genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-1957106255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae Aa a+++a+++++g
  DCAR_025650  57 HYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTFETAEAAAMAYDEAALRFKG 106
                  7********.**********64....55************************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-3256115IPR001471AP2/ERF domain
SMARTSM003802.0E-3657120IPR001471AP2/ERF domain
CDDcd000186.62E-2157115No hitNo description
SuperFamilySSF541713.66E-2257115IPR016177DNA-binding domain
PROSITE profilePS5103224.7957114IPR001471AP2/ERF domain
PfamPF008473.7E-1357106IPR001471AP2/ERF domain
PRINTSPR003671.5E-115869IPR001471AP2/ERF domain
PRINTSPR003671.5E-118096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MVSALSTVIG NKKDHSDSST ALTDDSQQQI QDQTVEHHQD EDNKQQEVEV EERRNRHYRG  60
VRQRPWGKWA AEIRDPVKAA RVWLGTFETA EAAAMAYDEA ALRFKGNKAK LNFPERVELH  120
QITRLPHIPP PSTTATQDHL PNNYNQLTHD FTQADQHKSS LHPSLPVSSN FMNYPYDSSN  180
VYQDHQLHSY GQLARGNDAQ LNSMSVSGPR GSNLYANLVS SSSSSSSTTG SSSTTTNLHA  240
ASSASQEDDF QFVGSGTSTK DHRDIRD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-2856117163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017216759.10.0PREDICTED: ethylene-responsive transcription factor ERF113-like isoform X1
SwissprotQ9FH541e-45EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A164U8R00.0A0A164U8R0_DAUCS; Uncharacterized protein
STRINGAT5G61890.15e-44(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.11e-32ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]