PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025374
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ZF-HD
Protein Properties Length: 316aa    MW: 34315.3 Da    PI: 9.0447
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025374genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer109.61.7e-3459116359
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                   v+YkeClkNhAa+lGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHRr++e+
  DCAR_025374  59 VVNYKECLKNHAATLGGHALDGCGEFMPSPSATpTDPTSLKCAACGCHRNFHRRDPED 116
                  589*****************************99********************9886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.4E-2860114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-1860118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.5E-3161113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.24362113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.97E-18181253IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-28186253IPR009057Homeodomain-like
TIGRFAMsTIGR015659.4E-26192248IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDITNTNTTP NTNTLTIKTT HESDLEISPT KIQLPKPLSF SNGVVLKHNA LSKPSIPVVV  60
NYKECLKNHA ATLGGHALDG CGEFMPSPSA TPTDPTSLKC AACGCHRNFH RRDPEDSSLT  120
LPPKNSFIEY QPHHRHRPPP PESPSSMSPP PISSSYPASA PHMLLALSDG LMGPQNNHSA  180
PIAHIRAHPN GRKRFRTKFS QQQKEKMFGF AERVGWKIQK RDEQDIINFC SEIGVDRSVL  240
KVWMHNNKST LGKRDSNINN NVNGNTNYNV NNNGDGGDQV QQAQLNNLQH SDSTGSPLVG  300
GVNLGPNGNV SSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-221932501875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00387DAPTransfer from AT3G28920Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017215707.10.0PREDICTED: zinc-finger homeodomain protein 10-like
SwissprotQ9LHF04e-71ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLA0A161Y7B70.0A0A161Y7B7_DAUCS; Uncharacterized protein
STRINGXP_010257380.13e-93(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.13e-69homeobox protein 34
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]