PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025238
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 288aa    MW: 32440.6 Da    PI: 5.3512
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025238genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-19114165156
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                  ++y+GVr ++ +g+W+AeIrd       r  r++lg+fgtaeeAa  +++a+ +++g+
  DCAR_025238 114 PKYRGVRLRP-WGKWAAEIRDsS-----RgGRIWLGTFGTAEEAAVVYDKAAIEIRGA 165
                  79********.**********33.....349************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.11E-31114171No hitNo description
PfamPF008472.4E-12114164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-28115172IPR001471AP2/ERF domain
PROSITE profilePS5103221.549115172IPR001471AP2/ERF domain
SMARTSM003809.1E-34115178IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-20115171IPR016177DNA-binding domain
PRINTSPR003679.4E-10116127IPR001471AP2/ERF domain
PRINTSPR003679.4E-10138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MNHSNDLSPV TYKVHRSFTS KQLSSPPAKW GPKDFSRVVR ISFTDSDATD SSSDDDVPNE  60
HITRRKIKKK YISEIKIAAF SEKPPENSNG VVKKKKLERP TKPNVKKLVP PNRPKYRGVR  120
LRPWGKWAAE IRDSSRGGRI WLGTFGTAEE AAVVYDKAAI EIRGANALTN FLKLPENIPA  180
PEVLPEVECK LEPEVESPTS VFRFRGKGEV DNGDWKPAEE VELKDGLWGL DEFESCYLSA  240
SSPLVYGEMM SVVEDMRCLD DEESLSYDFV KDFKSCAWDV EDFFGDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-19116171359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017217800.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
TrEMBLA0A161X6W90.0A0A161X6W9_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-29cytokinin response factor 4