PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_024472
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 370aa    MW: 41855 Da    PI: 6.675
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_024472genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.1e-19204252355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  ++GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+g
  DCAR_024472 204 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAVAYDTAAYLLRG 252
                  8******9.**********955...5**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.35E-32202262No hitNo description
SuperFamilySSF541712.48E-22203261IPR016177DNA-binding domain
PROSITE profilePS5103222.379203260IPR001471AP2/ERF domain
SMARTSM003808.6E-37203266IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-31203261IPR001471AP2/ERF domain
PfamPF008475.2E-12204252IPR001471AP2/ERF domain
PRINTSPR003678.8E-11204215IPR001471AP2/ERF domain
PRINTSPR003678.8E-11226242IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MDQYFPKVET FLPKELMLPS YFQEIVQGSH SFTDPNVWNI LHSNSESISP VDDKSCVATL  60
STYNIPDLAR TNFPEDSSCI PLNFLDFFPR LSQPTHDHVS EPSLISSSVD EKFPNLSLFL  120
NDPSILNVSK QPSESEIFEC HKNHLVQTSQ HSDQATSECL RMNQSLLTSY APKGLSDYWL  180
SATKTQPMKN SGRRIQKPSY TKLFRGVRQR HWGKWVAEIR LPRNRTRVWL GTFDTAEEAA  240
VAYDTAAYLL RGDYAHLNFP EQKHQLKANS MNGSTAALLE AKLQTMSGNN KPSEVRKATS  300
KKTCEESIET KEWQVDELKG KKGLVSNEKN RRPQQVFCAE NVNGVDQLSR MPSLDMDTIW  360
DALLVSSDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-20202260160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-20202270468ATERF1
3gcc_A4e-20202270468ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017218170.10.0PREDICTED: ethylene-responsive transcription factor ERF062-like
TrEMBLA0A164TC880.0A0A164TC88_DAUCS; Uncharacterized protein
STRINGGorai.011G157500.11e-95(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA109211825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.11e-66ERF family protein