PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_022977
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 90aa    MW: 10009.3 Da    PI: 9.4883
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_022977genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.5e-08852244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     g+WT    + + +a + + ++   +W  +a+ +g g+t++++k ++
      DCAR_022977  8 GSWTVKQNKAFEKALAVYDKDtpdRWYNVAKAVG-GKTAEEVKRHY 52
                     89********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.5E-7658IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-5861IPR009057Homeodomain-like
SuperFamilySSF466891.96E-12864IPR009057Homeodomain-like
PfamPF002492.7E-6852IPR001005SANT/Myb domain
PROSITE profilePS500906.226856IPR017877Myb-like domain
CDDcd001672.76E-6952No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MASMSSHGSW TVKQNKAFEK ALAVYDKDTP DRWYNVAKAV GGKTAEEVKR HYEILVADIR  60
RIENGNVPFP NYRTTGGNMQ GTISTEGWM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-38180181RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017214797.12e-55PREDICTED: protein RADIALIS-like 1 isoform X1
RefseqXP_017214798.12e-55PREDICTED: protein RADIALIS-like 1 isoform X1
SwissprotF4JVB82e-38RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A161ZSS62e-60A0A161ZSS6_DAUCS; Uncharacterized protein
STRINGevm.model.supercontig_62.1574e-43(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.18e-41RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]