PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_021577
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LBD
Protein Properties Length: 185aa    MW: 20408.7 Da    PI: 7.0008
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_021577genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260143.94.9e-4513111199
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrrkC++dC++apyfp e+p+kfanvhk+FGasn++kll+++ +++reda++sl+yeAear+rdPvyG+vg i+ lq q+e+l++el++++
  DCAR_021577  13 PCAACKFLRRKCVPDCIFAPYFPPEEPHKFANVHKIFGASNITKLLNDILPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQMQVERLQEELDAAN 110
                  7*********************************************************************************************9987 PP

       DUF260  99 e 99 
                  +
  DCAR_021577 111 A 111
                  6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089128.04112113IPR004883Lateral organ boundaries, LOB
PfamPF031954.5E-4413110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MASSSNTATY NTPCAACKFL RRKCVPDCIF APYFPPEEPH KFANVHKIFG ASNITKLLND  60
ILPHQREDAV NSLAYEAEAR VRDPVYGCVG AISFLQMQVE RLQEELDAAN ADLIQYASSC  120
NHRYPHQNMS SALPIQSTTT TQYTSQQAPR QIRPNNNAYY PTPSTFSFPW NDNNASGRGG  180
AAGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-6231351128LOB family transfactor Ramosa2.1
5ly0_B3e-6231351128LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNot known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017254795.11e-137PREDICTED: LOB domain-containing protein 25-like
SwissprotQ9FML43e-71LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A164VZ051e-136A0A164VZ05_DAUCS; Uncharacterized protein
STRINGXP_006476856.13e-77(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.49e-73LBD family protein
Publications ? help Back to Top
  1. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]
  2. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]