PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_021487
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 79aa    MW: 8841.02 Da    PI: 10.2825
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_021487genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.62.1e-111460347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      WT+   +l+ +a +++ ++   +W+ Ia+ +g g++++++k ++ k+
      DCAR_021487 14 TWTPKQNKLFEKALAKFDKDtpdRWHNIAKAVG-GKSAEEVKRHYEKL 60
                     7********************************.***********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129312.0231065IPR017884SANT domain
SMARTSM007171.1E-91163IPR001005SANT/Myb domain
SuperFamilySSF466892.32E-141370IPR009057Homeodomain-like
PfamPF002492.6E-91460IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-61467IPR009057Homeodomain-like
CDDcd001672.13E-62161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MASKSSTISS SNSTWTPKQN KLFEKALAKF DKDTPDRWHN IAKAVGGKSA EEVKRHYEKL  60
IEDVKSIESG TIPFPKYR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-29678274RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017258429.12e-51PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1731e-31RADL6_ARATH; Protein RADIALIS-like 6
SwissprotQ6NNN07e-32RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A164W1D65e-50A0A164W1D6_DAUCS; Uncharacterized protein
STRINGAquca_007_00235.11e-38(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-30RAD-like 1