PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_021438
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LBD
Protein Properties Length: 177aa    MW: 19994.1 Da    PI: 8.2845
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_021438genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260140.94.2e-4471061100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrrkC++dCv+apyfp +qp+kfanvhk+FGasnv kll++l++ +reda++sl+yeA+ar+rdPvyG+vg+i+ lq ql+q++ +l  +k
  DCAR_021438   7 RCAACKFLRRKCSQDCVFAPYFPPDQPQKFANVHKVFGASNVAKLLNDLRPVQREDAVNSLAYEADARLRDPVYGCVGLISILQDQLKQVQGDLINAK 104
                  6******************************************************************************************9998887 PP

       DUF260  99 ee 100
                  +e
  DCAR_021438 105 KE 106
                  76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.8996107IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-437103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MSSSNSRCAA CKFLRRKCSQ DCVFAPYFPP DQPQKFANVH KVFGASNVAK LLNDLRPVQR  60
EDAVNSLAYE ADARLRDPVY GCVGLISILQ DQLKQVQGDL INAKKELANY RTSAVLPYNM  120
LPMLGLCLNQ DHGAMPLVMH DHPQKQHLME AQQLAVAEWE QQEMLRPCKQ EQQRRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-5031107114LOB family transfactor Ramosa2.1
5ly0_B2e-5031107114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017256599.11e-129PREDICTED: LOB domain-containing protein 36-like
SwissprotQ9FKZ32e-61LBD36_ARATH; LOB domain-containing protein 36
TrEMBLA0A164W2G91e-128A0A164W2G9_DAUCS; Uncharacterized protein
STRINGGorai.007G210500.11e-70(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.11e-63ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  2. Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
    SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 92(6): p. 661-674
    [PMID:27605094]