PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_021280
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family TCP
Protein Properties Length: 307aa    MW: 33932.5 Da    PI: 6.9123
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_021280genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.56e-3521124191
          TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceaesssssasnsssg. 88 
                  a+g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak ai++l ++         ++ ++ + +++    ++++s++  
  DCAR_021280  21 ATGRKDRHSKVYTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKNAIDKLEELppwnpmdasTTVPNPNLNPNGLPLEQQQSQAYp 118
                  589**************************************************************777766554222222222222222222222112 PP

          TCP  89 ...kaa 91 
                     + +
  DCAR_021280 119 fhdNPS 124
                  322222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.5E-3122111IPR005333Transcription factor, TCP
PROSITE profilePS5136932.1812482IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGMKSNGGDI VQVEGGHILR ATGRKDRHSK VYTAKGPRDR RVRLAAHTAI QFYDVQDRLG  60
YDRPSKAVDW LINKAKNAID KLEELPPWNP MDASTTVPNP NLNPNGLPLE QQQSQAYPFH  120
DNPSDDTMKS FFPTSSGMNF HSYTGDVISR CSLQNNSQDL CLSLQSLQED INNSTHPAPG  180
HDHQGLYSGQ AETNFPRMVG WDGEIKPAGY YFNAQTLSQP QMICQSSTAA FSQREPLQSS  240
FSPYVRAWND LPFPVSDQNH TQALIPHLSI SSGSPYASAK FSGFQVPARI QGEEDHPSST  300
PTKSRN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014522077.11e-90PREDICTED: transcription factor TCP4-like
RefseqXP_014522078.11e-90PREDICTED: transcription factor TCP4-like
RefseqXP_014522079.11e-90PREDICTED: transcription factor TCP4-like
SwissprotQ9MAH82e-57TCP3_ARATH; Transcription factor TCP3
TrEMBLA0A0S3SHM32e-90A0A0S3SHM3_PHAAN; Uncharacterized protein
TrEMBLA0A0L9ULH92e-90A0A0L9ULH9_PHAAN; Uncharacterized protein
STRINGPOPTR_0019s12110.12e-85(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66072234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.13e-52TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3